Thanks for the quick reply, David. I did run RefreshParser with an unpacked database https://www.dropbox.com/s/uahmkoddorj1801/ipi.HUMAN.v3.87.fasta and generated a new pep.xml https://www.dropbox.com/s/yq34dnmqz9p163s/interact2.pep.xml There are now plenty of 2+ to 5+ spectra recognized.
But ProteinProphet now terminates with return code 65280. Can you reproduce the error with my pep.xml and fasta? Best Lars ---------------------------------------------------------------------------------------------------------------- ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v4.6 OCCUPY rev 3, Build 201307241109 (MinGW)) (xml input) (no FPKM) (report Protein Length) (using degen pep info) . . . reading in c:/Inetpub/wwwroot/ISB/data/comparisonPeakDetection/S/Mascot1/interact.pep.xml. . . . . . read in 0 1+, 14966 2+, 7736 3+, 608 4+, 47 5+, 0 6+, 0 7+ spectra with min prob 0.05 This application has requested the Runtime to terminate it in an unusual way. Please contact the application's support team for more information. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
