Hi, Your issues may be related to this post: Anyone running TPP on Mac 10.9 (Mavericks)?<https://groups.google.com/forum/#!topic/spctools-discuss/wO-0Kr1fkto> Maybe you'll find the answers there... Cheers, Bjorn
On Wednesday, 30 October 2013 14:37:17 UTC+1, Holy Rapan wrote: > > Dear All, > > I am trying to install TPP 4.6.3 on my mac following the instructions > here<http://tools.proteomecenter.org/wiki/index.php?title=The_Trans_Proteomic_Pipeline_(TPP)_for_Mac_OS_X_10.6.4>. > > When running the make all command, after a while I get the following error: > > perl -pe > "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath > > \-wp > //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g;s/linux/darwin/g > > " < ../../perl/tpp_models.pl > ../../build/darwin/tpp_models.pl > perl -c -I ../../build/darwin ../../build/darwin/tpp_models.pl > syntax error at ../../build/darwin/tpp_models.pl line 630, near "$head > qw(min_prob Sensitivity Error_Rate num_correct num_incorrect)" > Global symbol "$file" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 643. > syntax error at ../../build/darwin/tpp_models.pl line 652, near "}" > Can't use global @_ in "my" at ../../build/darwin/tpp_models.pl line 655, > near "= @_" > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 657. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 658. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 659. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 660. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 661. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 662. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 663. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 664. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 665. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 666. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 667. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 672. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 682. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 682. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 686. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 686. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 687. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 687. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 688. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 692. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 693. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 695. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 696. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 697. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 701. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 702. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 703. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 705. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 706. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 710. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 711. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 712. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 714. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 716. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 717. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 721. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 722. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 728. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 729. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 731. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 732. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 739. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 740. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 745. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 746. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 747. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 748. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 753. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 754. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 755. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 757. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 758. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 762. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 763. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 764. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 769. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 773. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 774. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 776. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 777. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 780. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 782. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 784. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 785. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 789. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 791. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 791. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 792. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 792. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 796. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 796. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 797. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 799. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 800. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 807. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 808. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 810. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 811. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 815. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 816. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 816. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 818. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 819. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 824. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 825. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 826. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 830. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 831. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 832. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 834. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 834. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 834. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 834. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 836. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 837. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 841. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 842. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 844. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 844. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 846. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 846. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 850. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 851. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 851. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 851. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 851. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 851. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 855. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 855. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 856. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 856. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 859. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 862. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 864. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 864. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 865. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 865. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 866. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 866. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 868. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 868. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 870. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 871. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 874. > Global symbol "%atts" requires explicit package name at ../../build/darwin/ > tpp_models.pl line 875. > Global symbol "$element" requires explicit package name at > ../../build/darwin/tpp_models.pl line 881. > syntax error at ../../build/darwin/tpp_models.pl line 884, near "$head > qw(Error_Rate min_prob num_correct num_incorrect)" > ../../build/darwin/tpp_models.pl has too many errors. > make[1]: *** [../../build/darwin/tpp_models.pl] Error 255 > make[1]: *** Deleting file `../../build/darwin/tpp_models.pl' > make: *** [perl_paths] Error 2 > > Could anyone help me with this please? > > Thanks, > Holy > -- You received this message because you are 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