Hi, Joe,
I am using perl v.15.8.
$ which perl
/usr/bin/perl
however, the
PERL_LIB_CORE=/usr/lib64/perl5/5.10.0/x86_64-linux-thread-multi/CORE/
Not sure why it is installed under 5.10.0, which is the only folder in
perl5. Could this affect the compilation? How shall I correct it?
Thanks a lot!
Qiaojun
On Monday, November 11, 2013 11:44:35 AM UTC+8, fangq...@gmail.com wrote:
>
> Hi,
>
> I am installing TPP4.5.2 on my CentOS. I got the following message when
> compiling:
>
> mkdir -p /software/TPP-4.5.2/src/../build/CentOS-x86_64
> make -C ../extern/xtandem/src
> TANDEM_PARAMETERS_INSTALL_DIR="/usr/local/tpp/bin/"
> SRC_ROOT="/software/TPP-4.5.2/src/" ARCH=CentOS-x86_64
> BUILD_DIR=/software/TPP-4.5.2/src/../build/CentOS-x86_64
> EXPAT_LIB=/software/TPP-4.5.2/src/../build/CentOS-x86_64/libexpat.a
> ZLIB_INCL="" ZLIB_LIB="-lz "
> USER_OBJS="/software/TPP-4.5.2/src/../build/CentOS-x86_64/TPPVersionInfo.o"
> make[1]: Entering directory `/software/TPP-4.5.2/extern/xtandem/src'
> make[1]: Leaving directory `/software/TPP-4.5.2/extern/xtandem/src'
> mkdir -p /software/TPP-4.5.2/src/../build/CentOS-x86_64/help
> mkdir -p /software/TPP-4.5.2/src/../build/CentOS-x86_64/schema
> mkdir -p /software/TPP-4.5.2/src/../build/CentOS-x86_64/images
> cd perl_paths; export PERL=perl; make -f perl_paths.makefile all
> make[1]: Entering directory `/software/TPP-4.5.2/src/perl_paths'
> perl -pe
> "s/\/cygdrive\/c\/Inetpub\/tpp-bin\//\/usr\/local\/tpp\/cgi\-bin\//g;s/\x24\{base_dir\}users\//\/usr\/local\/tpp\/cgi-bin\/users\//g;s/\/tools\/bin\/TPP\/tpp\//\/usr\/local\/tpp\//g;s/cygpath
>
> \-wp
> //g;s/\"\/cygdrive\/c\/Inetpub\/wwwroot\/\"/\\x24ENV\{\'WEBSERVER_ROOT\'\}\.'\/'/g;s/\/tpp\-bin/\/tpp\/cgi\-bin/g;s/'\/usr\/bin\//'/g;s/'\/bin\//'/g
>
> " < ../../CGI/show_nspbin.pl > ../../build/CentOS-x86_64/show_nspbin.pl
> perl -c -I ../../build/CentOS-x86_64 ../../build/CentOS-x86_64/
> show_nspbin.pl
> Use of ?PATTERN? without explicit operator is deprecated at
> ../../build/CentOS-x86_64/show_nspbin.pl line 123.
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 115, near
> "$head qw(bin_number nsp_range positive_freq negative_freq
> positive/negative_ratio)"
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 122, near
> "elsif"
> Global symbol "$element" requires explicit package name at
> ../../build/CentOS-x86_64/show_nspbin.pl line 122.
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 146, near
> "}"
> Global symbol "$element" requires explicit package name at
> ../../build/CentOS-x86_64/show_nspbin.pl line 148.
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 152, near
> "$head qw(bin_number ni_range positive_freq negative_freq
> positive/negative_ratio)"
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 157, near
> "}"
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 179, near
> "}"
> Can't use global @_ in "my" at ../../build/CentOS-x86_64/show_nspbin.plline
> 184, near "= @_"
> Global symbol "$element" requires explicit package name at
> ../../build/CentOS-x86_64/show_nspbin.pl line 186.
> Global symbol "$element" requires explicit package name at
> ../../build/CentOS-x86_64/show_nspbin.pl line 190.
> Global symbol "$element" requires explicit package name at
> ../../build/CentOS-x86_64/show_nspbin.pl line 194.
> syntax error at ../../build/CentOS-x86_64/show_nspbin.pl line 199, near
> "}"
> ../../build/CentOS-x86_64/show_nspbin.pl has too many errors.
> make[1]: *** [../../build/CentOS-x86_64/show_nspbin.pl] Error 255
> make[1]: *** Deleting file `../../build/CentOS-x86_64/show_nspbin.pl'
> make[1]: Leaving directory `/software/TPP-4.5.2/src/perl_paths'
> make: *** [perl_paths] Error 2
>
> Can someone have an idea of what to do with this? I am installing on
> CentOS6.2.
> Thanks a lot,
> Qiaojun
>
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