I think it would be handy to try out your modifications. Since we have a small user base that would need this we could probably make some further modifications to accommodate just their use.
-J On Wednesday, November 13, 2013 5:24:23 PM UTC-5, [email protected] wrote: > > Gary/Josh, > > That's good to hear since we're using the last open source version of SGE > and the commands should all be similar. Recently I've made to the Petunia > web interface (tpp_gui.pl) that should also work for you. What I've > done is made two simple modifications The first will prepend the "qrsh" to > the list of commands. That way the commands are submitted to the cluster > instead of running locally on the web server. The second (and more > controversial) change does yet another prepend to the command list, this > time using "sudo" to switch to the logged in user. Since Petunia already > has a undocumented feature that allows you to change its authentication > mechanism (we happen to use this to use LDAP to authenticate our TPP > users) this then allows one to make sure jobs are submitted as the > appropriate user. > > I've tested this out on our development systems here at ISB and it seems > to work pretty well. We haven't deployed it into production yet for as you > can imagine the security implications of having a CGI script using sudo and > being tied to a cluster are significant. We do intend to eventually roll > some solution like this but only after we can change our current system > configuration. (Our IT wants to ensure the web server node is locked down > and strictly controlled before they'll let any program use sudo so freely). > > If your interested I could share the code with you now -- or you can wait > until we release 4.7 which will have said hooks in place with hopefully > some documentation. > > -Joe > > > > On Tue, Nov 12, 2013 at 7:25 AM, Gary Smith <[email protected]<javascript:> > > wrote: > >> We're using UNIVA Grid Engine (aka. SGE). >> >> --g >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to >> [email protected]<javascript:> >> . >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> > > > > -- > Joe Slagel > Institute for Systems Biology > [email protected] <javascript:> > (206) 732-1362 > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
