The main error seems to be that the processing engine is not recognized running: "/usr/local/apps/tpp/bin/PeptideProphetParser 'interact.pep.xml'" (OpenMS/ConsensusID) error: engine OpenMS/ConsensusID not recognized
which seems to result from the attribute search_engine="OpenMS/ConsensusID" however the file does contain peptideprophet_result tags so it seems that you may have processed them with the OpenMS ConsensusID tool which does something similar to peptideprophet http://www-bs2.informatik.uni-tuebingen.de/services/OpenMS/OpenMS-release/html/TOPP_ConsensusID.html - is this the case? Hannes On 13 February 2014 12:08, 钟传奇 <andy...@gmail.com> wrote: > The zipped pepXML file is in the attachment. > > Chuan-Qi Zhong > > > On Thu, Feb 13, 2014 at 7:05 PM, 钟传奇 <andy...@gmail.com> wrote: >> >> I used openMS to process my data, and the results, idXML files, are then >> converted to pepXML using IDconverter in openMS. >> But these pepXML files cannot be processed by peptideprophet, and I >> noticed that peptideprophet can handle pep.XML files, so there is any >> difference between pepXML and pep.XML? >> I have attached a pepXML file. >> >> How to fix this issue? >> >> Thanks a lot. >> >> Best, >> >> >> Chuan-Qi Zhong > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
