On windows 7(both 32 and 64 bit) laptop, this is a problem I have seen many times that TPP installation overwrites the Path environment variable. So I save the path to a file before installation, and edit it to previous state after installing.
I don't know if it's the same problem on Linux but can be checked by developers. If possible, appending the TPP to path may be a better option than overwriting it. -- Amit On Wed, Mar 5, 2014 at 12:28 PM, Joseph Slagel < [email protected]> wrote: > Brian, > > I was able to reproduce the problem. Its an issue how the Makefile > deduces which perl executable you want to use. A quick fix is to just set > PERL_BIN to be where your executable is and then rebuild TPP. Since it > only affects perl scripts you might be able to get away with just deleting > the .pl files from the build area and typing make again in src/. > > The reason we didn't catch this is our automated build is explicitly > setting it before building. > > -Joe > > > > On Tue, Mar 4, 2014 at 4:55 PM, Brian Hampton <[email protected]>wrote: > >> Joe, >> >> I'm finding a number of perl files that are lacking the path to perl a >> the top of the file. The latest one is ProphetModels.pl. >> >> I should recompile, but what do I change to correct this? >> >> Thanks in advance, >> Brian >> >> >> >> >> On Tue, Mar 4, 2014 at 10:49 AM, Joseph Slagel < >> [email protected]> wrote: >> >>> Brian, >>> >>> Interesting. What's the first line in tpp_gui.pl? Does it point to a >>> valid instance of perl on your system? Do the newlines at the end of the >>> line look correct for Linux? And is the executable at the command line by >>> apache (e.g. sudo -u apache /usr/local/tpp/cgi-bin/tpp_gui.pl)? >>> >>> -Joe >>> >>> >>> >>> On Tue, Mar 4, 2014 at 7:16 AM, Brian Hampton <[email protected]>wrote: >>> >>>> Hello, >>>> >>>> I compiled and installed TPP 4.7 as I have done for previous versions >>>> e.g. 4.6.x on Ubuntu 12.04 but when I point my browser to cgi-bin/ >>>> tpp_gui.pl I get an internal server error and this in the apache error >>>> log: >>>> >>>> [Tue Mar 04 10:02:54 2014] [notice] Apache/2.2.22 (Ubuntu) >>>> PHP/5.3.10-1ubuntu3.10 with Suhosin-Patch configured -- resuming normal >>>> operations >>>> [Tue Mar 04 10:03:12 2014] [error] [client 192.168.60.15] (2)No such >>>> file or directory: exec of '/usr/local/tpp/cgi-bin/tpp_gui.pl' failed, >>>> referer: http://pal.som.umaryland.edu:8080/cgi-bin/ >>>> [Tue Mar 04 10:03:12 2014] [error] [client 192.168.60.15] Premature end >>>> of script headers: tpp_gui.pl, referer: >>>> http://pal.som.umaryland.edu:8080/cgi-bin/ >>>> >>>> >>>> The compile from the source ended normally and without any errors. >>>> >>>> Brian >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at http://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/groups/opt_out. >>>> >>> >>> >>> >>> -- >>> Joe Slagel >>> Institute for Systems Biology >>> [email protected] >>> (206) 732-1362 >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at http://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/groups/opt_out. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/groups/opt_out. >> > > > > -- > Joe Slagel > Institute for Systems Biology > [email protected] > (206) 732-1362 > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/groups/opt_out. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/groups/opt_out.
