Hello Everyone, I'm trying to generate a single ProteinProphet protXML file from two pepXML files. The pepXML files are replicates runs of an experiment searched with the same parameters and database using MASCOT.
When I run this command at the terminal: ProteinProphet interact-ISO25.pep.xml interact-ISO26.pep.xml interact-merged.prot.xml I get the following output and error (in red): ProteinProphet (C++) by Insilicos LLC and LabKey Software, after the original Perl by A. Keller (TPP v0.0 Development (DEV) rev 0, Build 201404071016 (linux)) (xml input) (no FPKM) (report Protein Length) (using degen pep info) . . . reading in /home/dfermin/projects/hwchoi/interact-ISO25.pep.xml. . . . . . read in 0 1+, 51475 2+, 21321 3+, 850 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 . . . reading in /home/dfermin/projects/hwchoi/interact-ISO26.pep.xml. . . . . . read in 0 1+, 33367 2+, 9900 3+, 172 4+, 0 5+, 0 6+, 0 7+ spectra with min prob 0.05 terminate called after throwing an instance of 'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<std::ios_base::failure> >' what(): failed opening file: No such file or directory This is a new one on me. The error occurs with the stable release of TPP 4.7.0 and with the development release (SVN revision 6468). I'm running TPP on CentOS 6.5 64bit (fully patched). Any suggestions for a work around? Thanks in advance, Damian -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
