Hi there,

I have some questions on setting up sequest searches for phospho searches, 
what's the best way to do this? And do I need to increase 
max_num_differential_AA_per_mod 
number accordingly here from 2 to 3 (or 5) in phospho searches?

diff_search_options = 43.0 K 16.0 M 0.0 X

to

diff_search_options = 43.0 K 16.0 M 80.0 STY 0.0 X


also is there a way to limit sequest results to just non-terminal 
modifications for a given residue?
Thanks,

David

-- 
You received this message because you are subscribed to the Google Groups 
"spctools-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to [email protected].
To post to this group, send email to [email protected].
Visit this group at http://groups.google.com/group/spctools-discuss.
For more options, visit https://groups.google.com/d/optout.

Reply via email to