But what if I only have the mzid files? Because I have successfully run the peptideprophet for mzid-transformed pepXML in TPP 4.6.3. Now both 4.6.3 and 4.7.1 fail.
在 2014年10月17日星期五UTC+8上午12时26分56秒，David Shteynberg写道： > > The problem is the idconvert generated pepxml is not compatible. I > believe MyriMatch includes pepxml output directly. That's more likely to > work. > > David > On Oct 15, 2014 10:06 PM, "李桂林" <[email protected] <javascript:>> wrote: > >> But now I get a new problem when I tried to run PeptideProphet (TPP >> 4.7.1) for Myrimatch search result. >> Here is how I do this >> 1. search against a target-decoy database with Myrimatch >> 2. transform the mzid file to pepXML using ProteoWizard idconvert >> 3. run PeptideProphet with command 'path\to\xinteract -Nout.pep.xml -p0 >> -l6 -OAP -Od -d###REV### input.pepXML' >> The InteractParser terminated in an unusual way reporting error >> Assertion failed: px != 0, file >> c:\release_4-7-1\trans_proteomic_pipeline\extern\boost_1_54_0\boost\smart_ptr\shared_ptr.hpp, >> >> line 653 >> How this happen? Anyone know about this? >> >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
