At least one of the input files pepxml is incomplete. Check the file sizes. Which version are you on?
-David On Oct 24, 2014 4:37 AM, "Etienne Caron" <etica...@gmail.com> wrote: > Dear Brian, > > I'm a postdoc in Ruedi Aeberold's group. I have the exact same problem as > posted by Andreas in 2009. > Here is the error message I get when I run xinteract from comet search > results: > *unable to read pepxml file: error parsing pepxml file: XML parsing error: > mismatched tag, at xml file line 10931001, column 2* > > Do you know how I can fix this problem? > > Thanks in advance for your help. > Best regards, > Etienne > > > > On Friday, July 10, 2009 4:25:05 PM UTC+2, Brian Pratt wrote: >> >> Perhaps you could upload the .dat file to ftp://insilicos.serveftp.net/ >> pub >> and I can investigate. Zip it up with the database you used, and the >> mzXML >> file (so, everything needed to run xinteract). >> >> Brian >> >> -----Original Message----- >> From: spctools...@googlegroups.com >> [mailto:spctools...@googlegroups.com] On Behalf Of andreas quandt >> Sent: Friday, July 10, 2009 12:52 AM >> To: spctools...@googlegroups.com >> Subject: [spctools-discuss] Re: parsing error for pepXML from mascot >> result >> >> >> hey brian, >> >> its 4.2.1 in that case ;-) >> >> >> Brian Pratt wrote: >> > What version of the software are you using? >> > >> > Brian >> > >> > -----Original Message----- >> > From: spctools...@googlegroups.com >> > [mailto:spctools...@googlegroups.com] On Behalf Of andreas quandt >> > Sent: Thursday, July 09, 2009 5:50 AM >> > To: spctools...@googlegroups.com >> > Subject: [spctools-discuss] parsing error for pepXML from mascot result >> > >> > >> > dear list, >> > >> > i analyzed a few samples with mascot and converted the dat file >> > successfully to pepXML (only error: scan number cannot be found). >> > afterwards i was running xinteract on all created pep.xml files >> > (arguments: l -dDECOY_ -OAlIwp). >> > this was also successful but when i want to display the results, i get >> > an error message: >> > >> > unable to read pepxml file: error parsing pepxml file: XML parsing >> > error: mismatched tag, at xml file line 1048198, column 2 >> > >> > when looking at the file, the line contains following tag: >> </search_hit>. >> > the same happens when using iprophet. here the error message is the >> same >> > and when jumping to the indicated line, the same tag appears. >> > >> > does anyone of you know what's going wrong and/or know how to fix this? >> > >> > many thanks in advance, >> > andreas >> > >> > >> > >> > >> > > >> > >> >> >> >> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To post to this group, send email to spctools-discuss@googlegroups.com. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
