Hi Brian, I have not seen that msconvert error; can you still reproduce it? (we once encountered a similar error that went away after running msconvert once via the command-line.) Otherwise I can only suggest looking at the file permissions in that directory.
Does the previous version of TPP/msconvert work with that same file? What about other raw file formats? Thanks for trying out the new release, --Luis On Thu, Dec 4, 2014 at 9:56 AM, Brian Hampton <[email protected]> wrote: > I just started using 4.8 on a 32 bit install of Win 7. Using Petunia I > began by converting Sciex .wiff files to mzML and got the following error > and output from this command: > > NOTE: I can run the same command in a CMD window and it succeeds. > > *c:\Inetpub\tpp-bin\msconvert > c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t/02Dec14-BH-RABA-Fxn1.wiff > -v --mzML -o c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t -z > --filter "peakPicking true [1,2]"* > > format: mzML > m/z: Compression-Zlib, 64-bit > intensity: Compression-Zlib, 32-bit > rt: Compression-Zlib, 64-bit > ByteOrder_LittleEndian > indexed="true" > outputPath: c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t > extension: .mzML > contactFilename: > > filters: > peakPicking true [1,2] > > filenames: > > c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t\02Dec14-BH-RABA-Fxn1.wiff > > processing file: > c:/Inetpub/wwwroot/ISB/data/projects/carotid/sds/141202-3t\02Dec14-BH-RABA-Fxn1.wiff > [WiffFileImpl::getSampleNames] The type initializer for > 'Clearcore2.Data.WiffReader.WiffSampleRun' threw an exception. > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
