Hello Sarah, Is your pepXML file 1hour_Set4_C.pep.xml complete? Did you observe any errors during the search? Can you look at the last few lines of that file, they should contain something like this:
... </analysis_result> </search_hit> </search_result> </spectrum_query> </msms_run_summary> </msms_pipeline_analysis> -David On Thu, Jan 15, 2015 at 10:30 AM, Sarah Parker <[email protected]> wrote: > Hello, > > Trying to run xinteract on comet search results (obtained via TPP). > > > > *EXECUTING: cd c:/Inetpub/wwwroot/ISB/data/parameters& > c:\Inetpub\tpp-bin\xinteract -Ninteract.pep.xml -p0.05 -l7 -PPM -OARP > -dDECOY 1hour_Set4_C.pep.xml *Getting this error: > > c:\Inetpub\tpp-bin\xinteract (TPP v4.8.0 PHILAE, Build 201411201551-6764 > (mingw-i686)) > PPM mode in Accurate Mass Model ... > > running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" > "1hour_Set4_C.pep.xml" -L"7"" > file 1: 1hour_Set4_C.pep.xml > SUCCESS: CORRECTED data file > c:\Inetpub\wwwroot\ISB\data\Data\SarahParker\1hour_Set4_C.mzXML in > msms_run_summary tag ... > > This application has requested the Runtime to terminate it in an unusual way. > Please contact the application's support team for more information. > > command "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" > "1hour_Set4_C.pep.xml" -L"7"" failed: Unknown error > > command "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" > "1hour_Set4_C.pep.xml" -L"7"" exited with non-zero exit code: 255 > QUIT - the job is incomplete > > I can't figure out what's wrong, can anyone help? > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
