Can you make the SQT and sequest.params file available to me? Either email it to me directly or make it available for download. I'll take a quick look to see what's happening. The mzXML/mzML file is optional; it will write instrument info into the resulting pep.xml if present.
- Jimmy On Sun, Mar 1, 2015 at 9:59 AM, Heeyoun Hwang <[email protected]> wrote: > > Hi, > > Because of my project, I have to search with sequest or ProLuCID in IP2, > and generate pep.XML file from *.sqt file for run the peptide prophet. > > I know that there is no convert program .sqt to .pep.xml in GUI version of > TPP. > > So, I used sqt2xml program in command line, but it is not working. > > the snapshots of .sqt, .sequest.param, and ms2 files were attached in here. > > I also tried change the path of FASTA file in param file, but sqt2xml is > still not working. > > Surely I converted mzXL from .RAW with msconvert. All files are in the > same directory including .mxML. I also attach the snapshot of my folder. > > > thanks. > > Heeyoun Hwang. > > > > > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
