Thanks, andyzcq. Since MAYU can take csv file as input, I think I can try to convert the file format.
-Han On Wednesday, March 25, 2015 at 12:55:40 AM UTC-4, andyzcq wrote: > > As I know, MAYU can be applied to the iProphet output, not ProteinProphet > output. > > On Tue, Mar 24, 2015 at 10:48 PM, hh1985 <[email protected] > <javascript:>> wrote: > >> Hi, >> >> I am planning to do LFQ using ProteinQuantifier from OpenMS, which can >> take ProteinProphet results as the identification input. However, for the >> data (human proteome data from PRIDE) that I am processing, there is a huge >> gap between output from ProteinProphet and MAYU, and I am thinking about >> using MAYU (if reasonable) to filter the protein IDs. My question is, is >> there any way to convert MAYU's result into protXML? >> >> >> PS: For 24 runs, >> ProteinProphet gives 5245 entries (1966 single hits) with IPROPHET option >> MAYU produces >> mFDR IP/PPs protFDR TP_protID TP_protIDs TP_protIDns protFDRns 0 >> 0.999996 0 6867 2918 3949 0 0.001 0.789611 0.006219 11332 3851 7481 >> 0.001598 0.002 0.387495 0.013356 11639 3869 7771 0.00378 0.003 0.172753 >> 0.020108 11917 3956 7963 0.005627 0.004 0.115397 0.026528 12003 3953 >> 8052 0.007476 0.005 0.073709 0.033135 12090 3946 8146 0.008813 0.006 >> 0.050291 0.039517 12185 3964 8223 0.010479 0.007 0.037582 0.044578 12268 >> 3971 8299 0.011241 0.008 0.028534 0.051116 12322 3953 8371 0.01285 >> 0.009 0.022003 0.056202 12415 3981 8436 0.014644 0.01 0.017422 0.062456 >> 12480 3989 8494 0.015794 >> Thanks, >> >> -Han >> >> . >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at http://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
