Another question in the same direction: is there a way to include missed 
cleavage sites in the spectrum-to-peptide-mapping, include those peptides 
for protein IDs, but exclude them for protein quants? This is important for 
chemically labeled peptides, which where combined for MS only after trypsin 
digestion.

This could possibly also be solved by excluding the peptides with a missed 
cleavage from quantitation in XPRESS in the first place.  Though here we 
would loose some information.

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