Hello Ryan It may make it easier to troubleshoot the issues if you post the actual output generated by the program.
Thank you, David On Dec 9, 2015 10:16 AM, "Ryan Lumpkin" <[email protected]> wrote: > Hello all, > > Thank you in advance for your help. I have been using MS-GF+ to search > spectra prior to analysis with TPP. I had to create a new set of scoring > parameters for MS-GF+ in order to handle Orbitrap Fusion combined CID/ETD > data, however after doing so, Peptide Prophet always errors out with 0 hits > following the accurate mass model and PepXMLViewer crashes. I am aware that > this can be indicative of bad data, yet my previous scoring parameters had > no problem dealing with this same dataset. I'm under the impression that > this is an issue with the settings used to generate those new scoring > parameters with MS-GF+, but I unfortunately I have not found a better > location to seek assistance with this. > > If anyone could point me in the right direction for resolving this, I > would greatly appreciate it. > > Ryan Lumpkin > Graduate Student > University of California, San Diego > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at http://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at http://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
