Thanks for the advice! We have now gotten TPP to run, but there were still a few small errors on the way.
Best, Constantin Am Mittwoch, 13. April 2016 22:44:22 UTC+2 schrieb [email protected]: > > Doesn't look like OBJ_ARCH is set properly now either. Can you run "make > info" and check to see what its value is? > > You might try assigning it a value, something like the following might > work: > > make ARCH=SUSE OBJ_ARCH=$PWD/../build/SUSE > > > On Wed, Apr 13, 2016 at 9:24 AM, Constantin <[email protected] > <javascript:>> wrote: > >> I changed the ARCH_DISTRO in the Makefile.incl and now its doing >> something! It compiles up to a point where it tells me: >> >> make: *** No rule to make target >> '/trans_proteomic_pipeline/src/../build/SUSE-x86_64/ASAPRatioPeptideParserTagListComparator.o', >> >> needed by '/trans_proteomic_pipeline/src/../build/SUSE-x86_64/libtpp.a'. >> Stop. >> >> Best, >> Constantin >> >> Am Mittwoch, 13. April 2016 17:35:23 UTC+2 schrieb >> [email protected]: >>> >>> It looks like there is a space between SUSE and LINUX. If so this would >>> explain some of the troubles. Easiest thing to do is set ARCH_DISTRO to >>> something without a space, say "SUSE". You can do this directly on the >>> command line as so: >>> >>> make ARCH_DISTRO=SUSE >>> >>> Or in the src/ directory you can add it to the bottom of Makefile.incl >>> in the src directory. >>> >>> -Joe >>> >>> >>> On Wed, Apr 13, 2016 at 12:46 AM, Constantin <[email protected]> wrote: >>> >>>> Hi Joe, >>>> >>>> thanks for the quick reply. The output is: SUSE LINUX. >>>> >>>> Best, >>>> Constantin >>>> >>>> Am Dienstag, 12. April 2016 20:28:12 UTC+2 schrieb >>>> [email protected]: >>>>> >>>>> What's the output for the following command? >>>>> >>>>> lsb_release -i -s || cut -d ' ' -f1 /etc/*release | head -n1 >>>>> >>>>> On Tue, Apr 12, 2016 at 9:39 AM, Constantin <[email protected]> wrote: >>>>> >>>>>> Hi everyone, >>>>>> >>>>>> I have some trouble getting the TPP v4.8 to compile on my LINUX >>>>>> distribution (SUSE LINUX Enterprise Desktop 12). >>>>>> My goal is to create spectral libraries from SpectraST. When running >>>>>> the makefile I get the following error messages: >>>>>> >>>>>> Makefile.incl:253: warning: overriding recipe for target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:250: warning: ignoring old recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:270: warning: overriding recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:253: warning: ignoring old recipe for target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:275: warning: overriding recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:270: warning: ignoring old recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:305: warning: overriding recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:275: warning: ignoring old recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:315: warning: overriding recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:305: warning: ignoring old recipe for >>>>>> target'/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:314: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> Makefile.incl:446: warning: overriding recipe for target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:315: warning: ignoring old recipe for target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:445: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> Makefile.incl:445: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> Makefile.incl:445: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> Makefile.incl:445: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> Makefile.incl:445: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> Makefile.incl:445: target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' given more than once in >>>>>> the >>>>>> same rule >>>>>> /trans_proteomic_pipeline/src/../extern/ProteoWizard/Makefile.pwiz.incl:208: >>>>>> >>>>>> warning: overriding recipe for target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> Makefile.incl:446: warning: ignoring old recipe for target >>>>>> '/trans_proteomic_pipeline/src/../build/SUSE' >>>>>> /trans_proteomic_pipeline/src/../extern/ProteoWizard/Makefile.pwiz.incl:207: >>>>>> >>>>>> *** mixed implicit and normal rules. Stop. >>>>>> >>>>>> From what I could read off the messages, there seems to be some >>>>>> problem with ProteoWizard. >>>>>> >>>>>> Best, >>>>>> Constantin >>>>>> >>>>>> -- >>>>>> You received this message because you are subscribed to the Google >>>>>> Groups "spctools-discuss" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, >>>>>> send an email to [email protected]. >>>>>> To post to this group, send email to [email protected]. >>>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>>> For more options, visit https://groups.google.com/d/optout. >>>>>> >>>>> >>>>> >>>>> >>>>> -- >>>>> Joe Slagel >>>>> Institute for Systems Biology >>>>> [email protected] >>>>> >>>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> >>> >>> -- >>> Joe Slagel >>> Institute for Systems Biology >>> [email protected] >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > > > -- > Joe Slagel > Institute for Systems Biology > [email protected] <javascript:> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
