Hi, When i am running peptideprophat with selection Decoy database option, i got following error message. Can any one tell me what is the problem in this analysis? How can i solve the problem?
c:\Inetpub\tpp-bin\xinteract (TPP v4.8.0 PHILAE, Build 201411201551-6764 (mingw-i686)) running: "C:/Inetpub/tpp-bin/InteractParser "interact.pep.xml" "17052016_NISHAD_ITRAQ_1.decoy.pep.xml" "17052016_NISHAD_ITRAQ_2.decoy.pep.xml" "17052016_NISHAD_ITRAQ_3.decoy.pep.xml" "17052016_NISHAD_ITRAQ_4.decoy.pep.xml" "17052016_NISHAD_ITRAQ_5.decoy.pep.xml" "17052016_NISHAD_ITRAQ_6.decoy.pep.xml" "17052016_NISHAD_ITRAQ_7.decoy.pep.xml" "17052016_NISHAD_ITRAQ_8.decoy.pep.xml" "18052016_NISHAD_ITRAQ_10.decoy.pep.xml" "18052016_NISHAD_ITRAQ_11.decoy.pep.xml" "18052016_NISHAD_ITRAQ_12.decoy.pep.xml" "18052016_NISHAD_ITRAQ_13.decoy.pep.xml" "18052016_NISHAD_ITRAQ_14.decoy.pep.xml" "18052016_NISHAD_ITRAQ_15.decoy.pep.xml" "18052016_NISHAD_ITRAQ_9.decoy.pep.xml" -L"7"" file 1: 17052016_NISHAD_ITRAQ_1.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_1.mzXML in msms_run_summary tag ... file 2: 17052016_NISHAD_ITRAQ_2.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_2.mzXML in msms_run_summary tag ... file 3: 17052016_NISHAD_ITRAQ_3.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_3.mzXML in msms_run_summary tag ... file 4: 17052016_NISHAD_ITRAQ_4.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_4.mzXML in msms_run_summary tag ... file 5: 17052016_NISHAD_ITRAQ_5.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_5.mzXML in msms_run_summary tag ... file 6: 17052016_NISHAD_ITRAQ_6.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_6.mzXML in msms_run_summary tag ... file 7: 17052016_NISHAD_ITRAQ_7.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_7.mzXML in msms_run_summary tag ... file 8: 17052016_NISHAD_ITRAQ_8.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_8.mzXML in msms_run_summary tag ... file 9: 18052016_NISHAD_ITRAQ_10.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_10.mzXML in msms_run_summary tag ... file 10: 18052016_NISHAD_ITRAQ_11.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_11.mzXML in msms_run_summary tag ... file 11: 18052016_NISHAD_ITRAQ_12.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_12.mzXML in msms_run_summary tag ... file 12: 18052016_NISHAD_ITRAQ_13.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_13.mzXML in msms_run_summary tag ... file 13: 18052016_NISHAD_ITRAQ_14.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_14.mzXML in msms_run_summary tag ... file 14: 18052016_NISHAD_ITRAQ_15.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_15.mzXML in msms_run_summary tag ... file 15: 18052016_NISHAD_ITRAQ_9.decoy.pep.xml SUCCESS: CORRECTED data file c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_9.mzXML in msms_run_summary tag ... processed altogether 39834 results INFO: Results written to file: c:/Inetpub/wwwroot/ISB/data/parameters/interact.pep.xml command completed in 258 sec running: "C:/Inetpub/tpp-bin/DatabaseParser "interact.pep.xml"" command completed in 1 sec running: "C:/Inetpub/tpp-bin/RefreshParser "interact.pep.xml" "c:/Inetpub/wwwroot/ISB/data/parameters/Chicken_DECOY.fa"" - Searching the tree... - Linking duplicate entries... - Printing results... - Building Commentz-Walter keyword tree...command completed in 14 sec running: "C:/Inetpub/tpp-bin/PeptideProphetParser "interact.pep.xml" MINPROB=0.05 ACCMASS NOICAT FORCEDISTR NONPARAM DECOYPROBS DECOY=DECOY" using Accurate Mass Bins Using Decoy Label "DECOY". Decoy Probabilities will be reported. Forcing output of mixture model Using non-parametric distributions (Comet) adding Accurate Mass mixture distr init with Comet trypsin MS Instrument info: Manufacturer: instrument model, Model: Waters instrument model, Ionization: UNKNOWN, Analyzer: UNKNOWN, Detector: UNKNOWN PeptideProphet (TPP v4.8.0 PHILAE, Build 201411201551-6764 (mingw-i686)) AKeller@ISB read in 0 1+, 17718 2+, 19865 3+, 0 4+, 0 5+, 0 6+, and 0 7+ spectra. Initialising statistical models ... Found 36277 Decoys, and 1306 Non-Decoys Iterations: .........10.........20.....WARNING: Mixture model quality test failed for charge (1+).WARNING: Mixture model quality test failed for charge (2+).WARNING: Mixture model quality test failed for charge (3+).WARNING: Mixture model quality test failed for charge (4+).WARNING: Mixture model quality test failed for charge (5+).WARNING: Mixture model quality test failed for charge (6+).WARNING: Mixture model quality test failed for charge (7+). model complete after 26 iterations command completed in 47 sec running: "C:/Inetpub/tpp-bin/ProphetModels.pl -i interact.pep.xml -d "DECOY"" Analyzing interact.pep.xml ... Reading Accurate Mass Model model +1 ... Reading Accurate Mass Model model +2 ... Reading Accurate Mass Model model +3 ... Reading Accurate Mass Model model +4 ... Reading Accurate Mass Model model +5 ... Reading Accurate Mass Model model +6 ... Reading Accurate Mass Model model +7 ... Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_1 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_2 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_3 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_4 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_5 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_6 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_7 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\17052016_NISHAD_ITRAQ_8 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_10 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_11 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_12 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_13 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_14 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_15 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) Parsing search results "c:\Inetpub\wwwroot\ISB\data\mzXML\18052016_NISHAD_ITRAQ_9 (Comet)"... => Found 0 hits. (0 decoys, 0 excluded) => Total so far: 0 hits. (0 decoys, 0 excluded) The system cannot find the path specified. command completed in 1 sec running: "C:/Inetpub/tpp-bin/LibraPeptideParser "interact.pep.xml" -ccondition.xml" command completed in 1 sec running: "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I c:/Inetpub/wwwroot/ISB/data/parameters/interact.pep.xml" command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I c:/Inetpub/wwwroot/ISB/data/parameters/interact.pep.xml" failed: Unknown error command "c:/Inetpub/wwwroot/../tpp-bin/PepXMLViewer.cgi -I c:/Inetpub/wwwroot/ISB/data/parameters/interact.pep.xml" exited with non-zero exit code: -1073741819 QUIT - the job is incomplete *Command FAILED* RETURN CODE:1280 All commands finished at *Sat Jun 18 23:26:59 2016* -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. 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