Hi,
Yes, when i am selecting  Force the fitting of the mixture model (bypass 
automatic mixture model checks) option  i succeeded peptideprophet and 
iprophet.

On Sunday, June 19, 2016 at 7:37:20 AM UTC+5:30, andyzcq wrote:
>
> I guess the developers of TPP are TOO busy to respond to you.
>
> Similarly, no one repond to my question concerning PTMprophet.
>  
> Have you succeeded to run peptideprophet and iprophet?
>
> On Sun, Jun 19, 2016 at 2:47 AM, Vijay Kumar <[email protected] 
> <javascript:>> wrote:
>
>> Hi,
>> Where i will get the complete step wise tutorial for Decoy peptide and 
>> protein validation including Mayu procedure for TPP.  
>>
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