Hi,
I tried to process mzML files with TPP 4.8/SpectraST 5.0. For some reason
it works on Windows, but not on Linux. On Linux the file extension mzML is
not listed in SpectraSTSearchTask.cpp and the else branch will be selected:
// create the search task objects
if (firstExt == ".msp" || firstExt == ".sptxt" || firstExt == ".MSP" ||
firstExt == ".SPTXT") {
return (new SpectraSTMspSearchTask(goodSearchFileNames, params,
lib));
} else if (firstExt == ".mzXML") { // Note that this stands for any of
the RAMP valid types (see above)
return (new SpectraSTMzXMLSearchTask(goodSearchFileNames, params,
lib));
} else if (firstExt == ".dta" || firstExt == ".DTA") {
return (new SpectraSTDtaSearchTask(goodSearchFileNames, params, lib));
} else if (firstExt == ".mgf" || firstExt == ".MGF") {
return (new SpectraSTMgfSearchTask(goodSearchFileNames, params, lib));
} else {
return (NULL);
}
Can someone point me to how to process mzML files? Did I miss a flag, or is
there a fix or newer version?
As a side note, it would be helpful if the else branch would contain an
error or warning.
Thanks!
Sten
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