Hello, I've been trying to run MyriMatch (version 2.2.8634) pepXML output files through xinteract but am unsure about how reliable the final output is. I've been using the following command:
xinteract -OARPd -dreverse_ -p0 -Ninteract.myrimatch.pep.xml myrimatchoutput.pepXML My first issue is that I receive this warning message from PeptideProphet: WARNING!! The discriminant function for Myrimatch is not yet complete. It is presented here to help facilitate trial and discussion. Reliance on this code for publishable scientific results is not recommended. Other posts in this Google group suggest this is simply a disclaimer, am I correct in thinking this? The ultimate output I receive confuses me quite a bit. For example, the interact.pep_AccMass png files look very strange to me (see attached png file). I'm unsure if I'm running MyriMatch correctly or if I'm using the wrong xinteract command for MyriMatch. If anyone has any ideas about this I'd love to hear them. Any help would be much appreciated Craig -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
