This has been fixed in the new schema (pepXML_V120.xsd), which is already on our code repository, and scheduled to be released with TPP 5.0 soon.
Cheers, --Luis On Thu, Mar 3, 2016 at 9:37 AM, David Shteynberg < [email protected]> wrote: > Hello Mal, > > Your point seems valid to me. Getting the an old demo file to validate > against the schema shouldn't warrant requiring this information to be > present multiple times in the file. We will correct this problem for a > future schema version. > > Thanks for your detailed report! > > -David > > On Thu, Mar 3, 2016 at 3:28 AM, Mal Ross <[email protected]> wrote: > >> Hi there, >> >> I was just looking back through the history of the PepXML format >> <https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/trans_proteomic_pipeline/schema/> >> and >> noticed that the latest commit shown for pepXML_v112.xsd mentions the >> removal of the search_engine attribute from the msms_run_summary element: >> https://sourceforge.net/p/sashimi/code/4028/ >> >> However, in pepXML_v118.xsd, I see that this attribute has returned in a >> commit that's aimed at getting a demo2009 file to validate: >> https://sourceforge.net/p/sashimi/code/6143/ >> >> Does that mean the attribute should never have been removed in the first >> place? It actually strikes me that it was *correct* to remove it and >> that the subsequent *reintroduction* is misguided, as child >> search_summary elements have their own search_engine attribute anyway. >> However, any guidance on this would be appreciated. >> >> Thanks, >> >> Mal. >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
