Hi, I am a member of the OpenMS team. Regarding the pepXML file format, we would like to improve compatibility with TPP. We are thinking about how to properly represent modifications in the "modified_peptide" attribute of "modification_info". An example we came across looks like: "n[35]RQLNK[162]LQHK[162]GEAR" and uses the nominal total mass of the N-terminus or the respective amino acids. Is this the preferred way to represent the modified_peptide string or do you suggest a different one? Best, Timo
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