Well, normally it should not, but depending on your data file(s) and parameters you’ve set as well as the computer you’re running on, it certainly may. Comet very rarely just keeps running without making progress, so the search you’ve specified is probably just too expensive for the computing power you’re making available to it. Using more threads, fewer mass mods, fully tryptic search, large MS2 binsize, smaller sequence database may all help. But without posting specifics, it is hard to guess what the problem might be. Posting your comet.params file might help.
Regards, Eric *From:* Joel Christie [mailto:[email protected]] *Sent:* Tuesday, January 24, 2017 9:55 AM *To:* spctools-discuss *Cc:* [email protected] *Subject:* Re: [spctools-discuss] Error while conversion of files Thanks it worked for me. Now I have different problem.Its been two days still Comet search is not over. I don't know whether it should take this much of time? On Saturday, 21 January 2017 00:25:08 UTC+5:30, Eric Deutsch wrote: Hi Joel, the problem is a space in your folder names. Some tools are confused by this. If you rename “Joel Data” to “JoelData” (without the space) and remove any other spaces in file name and folder names, things should work a lot better. Regards, Eric *From:* [email protected] <javascript:> [mailto: [email protected] <javascript:>] *On Behalf Of *Joel Christie *Sent:* Friday, January 20, 2017 9:14 AM *To:* spctools-discuss <[email protected] <javascript:>> *Subject:* [spctools-discuss] Error while conversion of files Dear all, I am facing an error while converting files from Sciex's .wiff files to MzML, I am uploading an error msg with this post. Please check and suggest me a solution. I am just beginning to use TPP. Much Thanks in Advance, Joel -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected] <javascript:>. To post to this group, send email to [email protected] <javascript:>. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
