Dear David, It worked now, many thanks! And another question: Shall I keep the pipeline to Comet or to Sequest? I use .srf files from Sequest. Many thanks for all your help!
Michaela On Monday, February 13, 2017 at 7:06:12 PM UTC+1, David Shteynberg wrote: > > The error and solution are both in your screen shot. The problem is there > are multiple databases referenced in the pepXML file. The solution is to > use the RefreshParser tool to map all peptides to one database. The tool > can be found in Petunia TPP Tools -> Re-map Search Database . > > Best of luck, > -David > > On Mon, Feb 13, 2017 at 9:02 AM, <[email protected] <javascript:>> > wrote: > >> Dear David, >> >> Thank you so much for the feedback. I have renamed the files into pep.xml >> and the update paths command was terminated successfully. However, when I >> am doing the analyze protein function i get the following, and job will >> contibue like this with no end. What is the problem here? >> Also what I am using is data deriving from sequest, shall I switch the >> pipeline to sequest instead of comet? >> >> Many thanks for your time again, >> Best regards, >> Michaela >> >> >> >> On Monday, February 6, 2017 at 8:14:04 PM UTC+1, David Shteynberg wrote: >>> >>> Sorry about that second sentence being full of typos. It should say: >>> Please rename your files so that they end in .pep.xml and then run the >>> updatePaths tool again. >>> >>> -David >>> >>> On Mon, Feb 6, 2017 at 11:12 AM, David Shteynberg < >>> [email protected]> wrote: >>> >>>> Hello Michaela, >>>> >>>> Your files end in .pepxml but updatePaths expects the .pep.xml >>>> extension. Please rename you files are run the tool again. >>>> >>>> -David >>>> >>>> On Mon, Feb 6, 2017 at 12:55 AM, <[email protected]> wrote: >>>> >>>>> >>>>> Hi everyone, >>>>> >>>>> Following up on my previous message, I am now attaching a screenshot >>>>> of the results I am getting. I thought it may be helpful. >>>>> >>>>> Many thanks and I am looking forward to your feedback. >>>>> >>>>> Best regards, >>>>> Michaela >>>>> >>>>> >>>>> -- >>>>> You received this message because you are subscribed to the Google >>>>> Groups "spctools-discuss" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send >>>>> an email to [email protected]. >>>>> To post to this group, send email to [email protected]. >>>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>>> For more options, visit https://groups.google.com/d/optout. >>>>> >>>> >>>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To post to this group, send email to [email protected] >> <javascript:>. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
