- Hi, - I am getting error (see below) while trying to convert The GPM human library that is in .hlf format (ftp://ftp.thegpm.org/projects/xhunter/libs/eukaryotes/lib/human_chromosomes/) to .splib format using spectralst. Any suggestion will be greatly appreciated.
C:\>spectrast -cN/dir/GPM_Trial c://dir/human_1_cmp_20.hlf SpectraST started at Sun Aug 06 00:43:12 2017. Importing spectra from .hlf (X!Hunter) library file...to be setModByType: 57 DONE! Library file (BINARY) "/dir/GPM_Trial.splib" created. Library file (TEXT) "/dir/GPM_Trial.sptxt" created. M/Z Index file "/dir/GPM_Trial.spidx" created. Peptide Index file "/dir/GPM_Trial.pepidx" created. Total number of spectra in library: 0 Total number of distinct peptide ions in library: 0 Total number of distinct stripped peptides in library: 0 CHARGE +1: 0 ; +2: 0 ; +3: 0 ; +4: 0 ; +5: 0 ; >+5: 0 ; Unk: 0 TERMINI Tryptic: 0 ; Semi-tryptic: 0 ; Non-tryptic: 0 PROBABILITY >0.9999: 0 ; 0.999-0.9999: 0 ; 0.99-0.999: 0 ; 0.9-0.99: 0 ; < 0.9: 0 NREPS 20+: 0 ; 10-19: 0 ; 4-9: 0 ; 2-3: 0 ; 1: 0 MODIFICATIONS None Total Run Time = 1 seconds. SpectraST finished at Sun Aug 06 00:43:13 2017 with 2 error(s): LOGGING: Cannot open log file "spectrast.log" for writing. No logging for curren t session. HLF IMPORT: Peptide ID has unknown modification: "G[57]P[97]P[97]G[57]P[97]K[128 ]". Skipped spectrum . -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
