Dear all, I am following the Nature Protocol Schubert et al. 2015 (with the mock dataset) and got stuck at the SpectraST consensus library generation. In particular, step 36B (and Box 4), which allows consensus library split, was indicated for identification of peptides carrying PTMs. However, in most recent tutorials ( http://tools.proteomecenter.org/wiki/index.php?title=Software:SpectraST or http://dia-swath-course.ethz.ch/downloads.html) I do not find the "consensus library split" option anymore and since by running python C:\Anaconda2\Scripts\spectrast_cluster.py -d 2 SpecLib.sptxt I am constantly getting the error message ImportError: cannot import name Ward, I was wondering if that is not obsolete and I should rather create a consensus library by running the "unsplit" option spectrast -cNSpecLib_cons -cICID-QTOF -cAC SpecLib.splib.
Help please! cheers, Fabia -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
