Hi Steven I have not seen that problem before, can you start Python from the command line and try
>>> import sys >>> print (sys.path) >>> from msproteomicstoolslib.data_structures.aminoacides import Aminoacides Best Hannes On Wednesday, October 18, 2017 at 6:53:48 PM UTC-4, Steven Shuken wrote: > > Hello, > > I'm a grad student following the Aebersold protocol on SWATH library > building: > https://www.nature.com/nprot/journal/v10/n3/full/nprot.2015.015.html > I'm on Step 37(B)(i) where the Anaconda script spectrast2rsv.py is run to > extract the 6 most intense fragment ion peaks from each consensus spectrum > to generate a SWATH library. > > When I run the script with the recommended options this happens: > > "C:\TPPdata>python C:\ProgramData\Anaconda2\Scripts\spectrast2tsv.py -1 > 350,2000 > -s b,y -x 1,2 -o 6 -n 6 -p 0.05 -d -e -w swaths.txt -k openswath -a > SpecLib_cons > _openswath.csv SpecLib_cons.sptxt > Traceback (most recent call last): > File "C:\ProgramData\Anaconda2\Scripts\spectrast2tsv.py", line 51, in > <module> > > from msproteomicstoolslib.data_structures.aminoacides import > Aminoacides > > ImportError: No module named > msproteomicstoolslib.data_structures.aminoacides" > > In fact, I have installed msproteomicstools and msproteomicstoolslib > (which contains data_structures\aminoacides.py, etc.) exists in > C:\ProgramData\Anaconda2\Lib\site-packages\. (I am reminded of this fact > every time I try to install msproteomicstools in a different location.) > > What am I missing? > > Thanks, > Steven > > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
