Hello Michaella, It seems that the pepXML output from PD is incorrect, as it is missing the needed *base_name* value within the msms_run_summary tag. This could be added to the file by editing it in a text editor, though that may just expose other issues. We don't have access to this proprietary software, so we don't officially support it. Hope this helps, --Luis
On Mon, Nov 6, 2017 at 9:58 AM, <[email protected]> wrote: > Hi Everyone, > > I am updating the paths for .pep.xml files generated from QExactive mass > spec raw files using the export to pepXML function of Proteome Discoverer. > However the update paths failed (see attached printscreen). Any advice > what to do? > > Many thanks for your time! > Best regards, > Michaela > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
