I need to use the tool PeptideProphet <http://peptideprophet.sourceforge.net/> independently (without TPP) . I was successful in compiling it in Linux.
After compilation 4 executable binaries were generated: ScoreCalculator, PeptideProphet, PeptideProphetOutput and runPeptideProphet. I can execute runPeptideProphet without any problem by passing a html file as its input argument. But I need to use a pep.xml file (generated by the tool Comet <http://comet-ms.sourceforge.net/>) as the input argument for runPeptideProphet. I have already done it via the PeptideProphet in the TPP tool, but I wonder how to do it for PeptideProphet that I compiled independently? May someone please guide me in this problem? Respects. -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
