Hello again, Please disregard my last message; I found that you have already posted a solution, which I followed. Unfortunately, however, the installation fails again, although at another point. I'm pasting the failing command below.
g++ -L/home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/lib / home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/ mzIMLTools/mzIMLDemo/CPepXMLAnalysis.o /home/panos/Programs/TPP_5.1.0_src/ build/gnu-x86_64/artifacts/Parsers/mzIMLTools/mzIMLDemo/CPepXMLPeptide.o / home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/ mzIMLTools/mzIMLDemo/CPepXMLPSM.o /home/panos/Programs/TPP_5.1.0_src/build/ gnu-x86_64/artifacts/Parsers/mzIMLTools/mzIMLDemo/CPepXMLSearch.o /home/ panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/mzIMLTools/ mzIMLDemo/CPepXMLSpectrum.o /home/panos/Programs/TPP_5.1.0_src/build/gnu- x86_64/artifacts/Parsers/mzIMLTools/mzIMLDemo/cpxIndPeptide.o /home/panos/ Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/mzIMLTools/ mzIMLDemo/cpxModInfo.o /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/ artifacts/Parsers/mzIMLTools/mzIMLDemo/cpxPeptide.o /home/panos/Programs/ TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/mzIMLTools/mzIMLDemo/ cpxProtein.o /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/ Parsers/mzIMLTools/mzIMLDemo/cpxProteinGroup.o /home/panos/Programs/TPP_5. 1.0_src/build/gnu-x86_64/artifacts/Parsers/mzIMLTools/mzIMLDemo/ PepXMLParser3.o /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/ artifacts/Parsers/mzIMLTools/mzIMLDemo/ProtXMLParser2.o /home/panos/Programs /TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/mzIMLTools/mzIMLDemo/ mzIMLDemo.o /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/lib/libtpp.a /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/lib/libmzparser.a -lexpat -lz /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/lib/libmzimltools.a -lexpat -lz -o /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/bin/ MzIMLDemo /home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/ mzIMLTools/mzIMLDemo/mzIMLDemo.o: In function `convertProt(CMzIdentML&, char*)': mzIMLDemo.cpp:(.text+0x45f7): undefined reference to `CProteinAmbiguityGroup ::addParamValue(std::string, std::string, double)' mzIMLDemo.cpp:(.text+0x4697): undefined reference to `CProteinAmbiguityGroup::addParamValue(std::string, std::string, std::string)' mzIMLDemo.cpp:(.text+0x47d2): undefined reference to `CProteinAmbiguityGroup::addProteinDetectionHypothesis(std::string, std::string, bool)' collect2: error: ld returned 1 exit status /home/panos/Programs/TPP_5.1.0_src/src/Parsers/Makefile:219: recipe for target '/home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/bin/MzIMLDemo' failed make: *** [/home/panos/Programs/TPP_5.1.0_src/build/gnu-x86_64/bin/MzIMLDemo] Error 1 I must say here that the installation failed at a previous command as well, which I was able to overcome by manually compiling with g++-6 (and then running "make all" which resumes from where it left off). g++-6 -O2 -Wno-deprecated -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DTPPLIB -I/home/panos/Programs/TPP_5.1.0_src/src -I/home/panos/Programs/TPP_5.1.0 _src/build/gnu-x86_64/include -D__LINUX__ -fPIC -MMD -c -o /home/panos/ Programs/TPP_5.1.0_src/build/gnu-x86_64/artifacts/Parsers/mzIMLTools/ CProteinAmbiguityGroup.o /home/panos/Programs/TPP_5.1.0_src/src/Parsers/ mzIMLTools/CProteinAmbiguityGroup.cpp Unfortunately I couldn't do the same with "MzIMLDemo"... Any help is appreciated, Panos -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
