Please can someone advise - is it recommended to include decoys in my database when using X! for searches then peptide/protein prophet in TPP?
As I understand, X! recommends not including decoys in searches (when used standalone) – however when I analyse X! identified peptides using peptide/protein prophet, I assume that I will need decoy matches to help pin down the correct distribution? Thanks Pete -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
