gcc version 6.3.0 (GCC) Hopefully that's helpful.
On Mon, Jun 11, 2018 at 2:50 PM David Shteynberg < [email protected]> wrote: > Hello Peter, > > Which compiler version are you using? > > Thanks, > -David > > On Mon, Jun 11, 2018 at 11:16 AM, Peter Sudmant <[email protected]> > wrote: > >> I seem to be having the same problem, with and without line 301 commented >> out. has anyone found a solution for this? >> >> On Tuesday, November 28, 2017 at 3:17:18 PM UTC-5, David Shteynberg wrote: >>> >>> Hello lejeczek, >>> >>> Our nightly build executes without any issues using gcc 4.4.7 on linux >>> using mingw64. Which version of gcc do you have on your system? It seems >>> to be complaining of not finding the boost_filesystem library when >>> compiling msconvert "undefined reference to >>> `boost::filesystem::detail::copy_file". This build product should be >>> getting built in >>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-srcbuild/linux-x86_64/lib/libboostfilesystem.a >>> , can you verify it exists on your system? Google pointed me to an article >>> with a possible solution: >>> http://stackoverflow.com/questions/35007134/c-boost-undefined-reference-to-boostfilesystemdetailcopy-file >>> >>> The suggested solution is to add -DBOOST_NO_CXX11_SCOPED_ENUMS to your >>> compiler flags. However, common.mk already has this flag enabled on >>> line 301 for ur >>> >>> Can you try to comment out this line in common.mk file in case that >>> your more modern compiler compiles with -std=c++11 in which case this >>> definition should be disabled? >>> >>> -David >>> >>> >>> On Mon, Nov 20, 2017 at 9:41 AM, lejeczek <[email protected]> wrote: >>> >>>> hi, I wonder.. >>>> if it fails for you too? >>>> Is it purely boost problem/failure? >>>> And lastly, how to solve it? >>>> I'm on Centos 7.4 >>>> >>>> error: >>>> ... >>>> g++ >>>> -L/home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib >>>> -o >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/bin/msconvert >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/artifacts/pwiz/pwiz_tools/commandline/msconvert.o >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib/libpwiz.a >>>> \ >>>> >>>> -L/home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib >>>> \ >>>> -lboost_system -lboost_program_options \ >>>> -lboost_filesystem -lboost_iostreams -lboost_regex -lboost_thread >>>> -lboost_chrono \ >>>> -lboost_serialization \ >>>> -lm -lrt -lz -lpthread >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib/libpwiz.a(Filesystem.o): >>>> In function `boost::filesystem::copy_file(boost::filesystem::path const&, >>>> boost::filesystem::path const&, boost::system::error_code&)': >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0/boost/filesystem/operations.hpp:502: >>>> undefined reference to >>>> `boost::filesystem::detail::copy_file(boost::filesystem::path const&, >>>> boost::filesystem::path const&, boost::filesystem::copy_option::enum_type, >>>> boost::system::error_code*)' >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/lib/libpwiz.a(Filesystem.o): >>>> In function `boost::filesystem::copy_file(boost::filesystem::path const&, >>>> boost::filesystem::path const&)': >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/extern/ProteoWizard/pwiz-src/libraries/boost_1_56_0/boost/filesystem/operations.hpp:495: >>>> undefined reference to >>>> `boost::filesystem::detail::copy_file(boost::file,system::path const&, >>>> boost::filesystem::path const&, boost::filesystem::copy_option::enum_type, >>>> boost::system::error_code*)' >>>> collect2: error: ld returned 1 exit status >>>> make: *** >>>> [/home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/bin/msconvert] >>>> Error 1 >>>> /home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/extern/ProteoWizard/Makefile:334: >>>> recipe for target >>>> '/home.sysops/appmgr/rpmbuild/tar.src/TransProteomicPipeline/TPP_5.1.0-src/build/linux-x86_64/bin/msconvert' >>>> failed >>>> >>>> -- >>>> You received this message because you are subscribed to the Google >>>> Groups "spctools-discuss" group. >>>> To unsubscribe from this group and stop receiving emails from it, send >>>> an email to [email protected]. >>>> To post to this group, send email to [email protected]. >>>> Visit this group at https://groups.google.com/group/spctools-discuss. >>>> For more options, visit https://groups.google.com/d/optout. >>>> >>> >>> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To post to this group, send email to [email protected]. >> Visit this group at https://groups.google.com/group/spctools-discuss. >> For more options, visit https://groups.google.com/d/optout. >> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To post to this group, send email to [email protected]. > Visit this group at https://groups.google.com/group/spctools-discuss. > For more options, visit https://groups.google.com/d/optout. > -- Peter -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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