Hello, I have searched a dataset using Comet (target-decoys search) and I am now trying to filter it using iProphet. I used the error table to decide on a probability threshold based on the Error_Rate. However, in the exported data the number of decoy hits above the probability threshold does not match the number of incorrect matches (num_incorrect) in the error table. Should those be matching or am I missing something?
Please find enclosed the link for the Models file (containing the error table), the iProphet xml output file, and the extracted iProphet output file above a probability cut-off of 0.7627, which should correspond to 917 incorrect identifications. https://drive.google.com/open?id=1zFyrJCaK2ZdpfJ-1VmiIvv7S38yZSZSD Thank you very much for your help! Sincerely, Rachel -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To post to this group, send email to spctools-discuss@googlegroups.com. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
