I apologize if this has been answered previously, but is it possible to 
alter the default parameters chosen by the TPP GUI. I assume these are set 
in one of the .pl scripts, but I couldn't seem to find which lines of code 
to alter.

I would like to set these a defaults when running analyze peptides:

<https://lh3.googleusercontent.com/-2aXWsKCuCaQ/W2hT5LQJVFI/AAAAAAAAXSQ/4eo5B8yQZRY-mjtYSACxInw33_rRtfDqgCLcBGAs/s1600/desired_defaults.png>



Thanks!
joey

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