*How can I perceive the phospho residue identified protein? *

I have performed the complete analysis, up to PTMProphet, I am able to 
identify the 10,000 phospho sites for the peptides. My question is how can 
I link these phospho sites to identify them in the protein information and 
see only the identified phosphoproteins. And also perform the relative 
quantification as the peptides are labelled with TMT.

Thanks in advance 
Regards
Azmal

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