Hi David, Have you had a chance to look into this?
Thanks! Alastair Am Samstag, 10. November 2018 10:42:05 UTC+1 schrieb [email protected]: > > Yes, the decoys are in a separate list in the .dat file. The database > matches are in the section starting: > > Content-Type: application/x-Mascot; name="peptides" > > while the decoys are in the section starting: > > Content-Type: application/x-Mascot; name="decoy_peptides" > > In the decoy PSM lists Mascot simply uses the name of the database entry > from which the decoy sequence is derived - with no addition of 'REV' or > 'decoy' or any other indication to the name - just to be extra confusing. > So Mascot2XML will have to add some suitable prefix. > > Thanks, > Alastair > > Am Donnerstag, 8. November 2018 17:07:30 UTC+1 schrieb David Shteynberg: >> >> As far as I am aware Mascot2XML reports all results including decoys >> unless the decoys are encoded in a different way fron other IDs. Are you >> sure that the dat file contains decoys? I will definitely look into this. >> >> -David >> >> On Thu, Nov 8, 2018, 2:25 AM alastair.skeffington via spctools-discuss < >> [email protected] wrote: >> >>> Hello, >>> >>> Another query about Mascot2XML I'm afraid: >>> >>> As far as I can tell, no decoy results are carried over from the Mascot >>> .dat file into the pep.xml file. Is there a reason for this? Is there >>> anyway to include these results? >>> >>> Many thanks, >>> Alastair >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To post to this group, send email to [email protected]. >>> Visit this group at https://groups.google.com/group/spctools-discuss. >>> For more options, visit https://groups.google.com/d/optout. >>> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/spctools-discuss. For more options, visit https://groups.google.com/d/optout.
