Hi Felipe,

Massd is the mass difference between measured and theoretical masses of the
nearest isotope, assuming the peptide identity based on then mass.
Isomassd is the isotopic offset.  Let me know if you have any other
questions.

David



On Fri, Mar 22, 2019, 8:21 AM Felipe da Veiga Leprevost <
[email protected]> wrote:

> Dear David;
>
> Could you provide some details on how the PeptideProphet massd and
> isomassd scores are calculated ?
>
> Thanks
>
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