Hi David, Thanks for the suggestion. I also suspected the same and currently doing the manual check. However, as I said, Comet did not report any error! My other query is, which format should I take as raw data (mzML/mzXML) as search input and how much it differs in terms of peptide identified (pep.xml)? I also need to combine the result of comet and tandem after that.
Thanks, Sudip On Wednesday, July 31, 2019 at 12:00:38 AM UTC+5:30, David Shteynberg wrote: > > Hi Sudip, > > Based on the message it appears that your fasta database may contain amino > acid letter codes that make Tandem fail. Can you check your fasta > database to make certain it contains only valid protein sequences? > > Thanks, > -David > > On Tue, Jul 30, 2019 at 8:15 AM sudip ghosh <[email protected] > <javascript:>> wrote: > >> Hi All, >> >> I am trying to search some mzML/mzXML (converted from .wiff) files in X! >> Tandem but it fails repeatedly (RETURN CODE:65280, 256). While the same >> set of mzML file was searched successfully in Comet. I am attaching the >> param file. Please help me out. >> >> Regards, >> Sudip >> >> [image: XTandem error.png] >> >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected] <javascript:>. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/c0d3db5b-15e8-4be0-98b4-1b9035677d4c%40googlegroups.com >> >> <https://groups.google.com/d/msgid/spctools-discuss/c0d3db5b-15e8-4be0-98b4-1b9035677d4c%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/161687fe-77e6-4208-ba86-b53cab9c0bc1%40googlegroups.com.
