Hello Sir/Madam, We used TPP and PTMprophet for PTM analysis. PTM taken (Phosphorylation- STY)
After comet followed by PTM prophet analysis this is how pepxml view is: We are getting columns of probability and some other columns. [image: C1.PNG] PROBLEM: In the filtering options we are not getting option of *peptideprophet probability and PTMprophet probabilities (although iprophet probability option is coming). * [image: C2.PNG] Could you please help me solve this. Looking forward to hearing from you Thanks and regards, *Mehar Un Nissa* Research Scholar, Proteomics Lab. Department of Biosciences and Bioengineering, Indian Institute of Technology, Bombay-400076 -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAH%2BQocpZuw%3DPHbSwboEe1fxkJor5xTwbC0M5rpweWC3tVQxt3A%40mail.gmail.com.
