Javan, As the message states, the Comet binary is for version 2018.01 yet you are attempting to use a comet.params file for newer Comet version 2019.01. You have 2 options.
1. The first is to get rid of the comet.params you're using and grab one for version 2018.01. At the top of this page <http://comet-ms.sourceforge.net/parameters/parameters_201801/>, you can download example comet.params files for version 2018.01. Rename them to just "comet.params", modify parameters as needed, and try the search again. 2. Your second option is to stick with your 2019.01 parameters file and update the Comet executable. I would personally go this route. To do that, go here and download the comet_2019015.zip file <https://sourceforge.net/projects/comet-ms/files/>. Grab the comet.2019015.win64.exe binary within that zip archive, rename it to comet.exe and place it in c:\TPP\bin\. You will be replacing the existing 2018.01.4 version of comet.exe in that directory (which you may consider backing up before replacing). Try the search again after updating the binary. Good luck. On Mon, Apr 13, 2020 at 11:18 AM Javan Okendo <[email protected]> wrote: > Hi, > > How are you attempting to running Comet? > I am running this data using the TPP program. > > The program gives this message > > Comet version 2018.01 rev. 4 > > The comet.params file is from version 2019.01 > Please update your comet.params file. You can generate > a new parameters file using "comet -p" > > > > > On Mon, Apr 13, 2020 at 7:40 PM Jimmy Eng <[email protected]> wrote: > >> Javan, >> >> This implies the Comet search has not run. How are you attempting to >> running Comet? You mention searchGUI in your title ... are you using the >> TPP to run Comet or CometOmic's SearchGUI? >> >> Jimmy >> >> On Mon, Apr 13, 2020 at 10:27 AM JAVAN OKENDO <[email protected]> >> wrote: >> >>> I get the following error even though my mzML raw files are in the >>> "Data" dir. Why is the program complaining about the .pepXML not found and >>> yet am doing the comet search? I am stuck and I disparately need your >>> assistance >>> >>> - c:/Data/170909_CH_C1_T006_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T007_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T009_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T010_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T011_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T013_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T014_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T015_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T025_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T026_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T027_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T037_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T042_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T049_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T051_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T052_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T053_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T054_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T061_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T062_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T064_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T069_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T073_FT_R2.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T075_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T077_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T080_FT.pep.xml (*file not found:* not >>> created or deleted?) >>> - c:/Data/170909_CH_C1_T084_FT_R2.pep.xml (*file not found:* not >>> created or deleted? >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/aa0607da-e037-4a8c-a94f-4bbfb5eab0e8%40googlegroups.com >>> <https://groups.google.com/d/msgid/spctools-discuss/aa0607da-e037-4a8c-a94f-4bbfb5eab0e8%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- >> You received this message because you are subscribed to the Google Groups >> "spctools-discuss" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/spctools-discuss/CAJqD6EPk%3DzDb1yZPzAXMoDSCwH7mtNYWeMRiiy66R-A6j3Zx3Q%40mail.gmail.com >> <https://groups.google.com/d/msgid/spctools-discuss/CAJqD6EPk%3DzDb1yZPzAXMoDSCwH7mtNYWeMRiiy66R-A6j3Zx3Q%40mail.gmail.com?utm_medium=email&utm_source=footer> >> . >> > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/CAGdnHmveXWFvWgk7v6tsEE7j9UJLxuOphNtV%2BkVmy1f8HKxN8w%40mail.gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/CAGdnHmveXWFvWgk7v6tsEE7j9UJLxuOphNtV%2BkVmy1f8HKxN8w%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. 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