Hello Jimmy,

I was able to create a .pin file from Comet, but how do I run that in the 
external Percolator tool on TPP when it only accepts .txt files? Thank you 
for your help!

Best,
Gabby

On Monday, June 8, 2020 at 6:43:54 PM UTC-4, Jimmy Eng wrote:
>
> Confirm that you are using Comet's Percolator output which you can 
> generate by setting "output_percolatorfile = 1" in the search parameters.  
> This will create a tab-delimited text file with a ".pin" file extension.  
> Note that this is different than Comet's ".txt" output file which is a 
> different tab-delimited output file that's not meant for Percolator.
>
> On Monday, June 8, 2020 at 3:22:31 PM UTC-7, Gabrielle H wrote:
>>
>> Hello, 
>>
>> I exported a Comet search as a txt file to search with percolator and the 
>> percolator has now been "running" for three days. When I try to kill the 
>> job, it gives me "Unable to kill command 8760! ()." I'm guessing it's 
>> stuck in a loop, but I was wondering what the best way of ending job/fixing 
>> the program would be. Thank you for your help. 
>>
>

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