Hi Robert, Thank you very much for quick response.
On Tue, Aug 25, 2020, 17:34 Robert Winkler <[email protected]> wrote: > Hi, > > You could use ProtyQuant, which calculates the 'accumulated peptide > presence' for each hypothetical protein: > > > https://chemrxiv.org/articles/preprint/ProtyQuant_Comparing_Label-Free_Shotgun_Proteomics_Datasets_Using_Accumulated_Peptide_Probabilities/12404363 > > The algorithm is similar to spectral counting (e.g. used by the StPeter > plugin of the TFF), but integrating the protein inference calculation > and quantification. > > The input files are pepXML of the Trans-Proteomic Pipeline. Results are > plain text files (tables.) > > You can find the software at: > https://bitbucket.org/lababi/protyquant/ > > Feedback and questions are welcome (the manuscript is currently under > review). > > Best regards, Robert > > Excerpts from Mehar Un Nissa's message of 2020-08-25 14:47:34 +0530: > > Dear Sir/Madam, > > Which tool in TPP is used to get the abundance value or is there any > other > > way to measure the protein expression? > > > > I look forward to hearing from you. > > > > Thanks and regards, > > > > *Mehar Un Nissa* > > Research Scholar, > > Proteomics Lab. > > Department of Biosciences and Bioengineering, > > Indian Institute of Technology, Bombay-400076 > > > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/1598356573-sup-6526%40rob-Lenovo-Y720-15IKB > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAH%2BQocooFKS0ibST43vf4ZWgOCyUByxSWWzQ4YTGoJfxnw%3DXaQ%40mail.gmail.com.
