Hi, I just published a software for post-processing TPP .pepXML files (validated by PeptideProphet). The GUI software has the following functions:
- Calculation of protein inference/ probability - Quantification; kind of spectral counting, but using peptide probabilities - Compilation of tables in simple CSV format, for direct comparison of protein presence/ quantity in the different samples. Most functions are implemented in the graphical user interface (Windows installer, Python, Docker.) For the experts, the code repository (https://bitbucket.org/lababi/protyquant/) also contains some scripts ;-). "ProtyQuant: Comparing label-free shotgun proteomics datasets using accumulated peptide probabilities" https://doi.org/10.1016/j.jprot.2020.103985 Have fun, Robert -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/20a56388-1ab2-486b-a7d4-fd7f7e1c6113n%40googlegroups.com.
