Both worked! Thanks so much! On Thursday, October 1, 2020 at 10:55:24 AM UTC-5 [email protected] wrote:
> It might also be worth trying the --ignoreUnknownInstrumentError flag in > your mzML command. > We had a similar problem with a new Thermo instrument where it wasn't > supported yet, and this flag just skips the check on the instrument ID. > > On Wednesday, September 30, 2020 at 3:15:29 PM UTC-4 David Shteynberg > wrote: > >> Hi Laura, >> >> Can you try downloading the latest version of msconvert and replacing >> your copy in C:/TPP/bin or where you currently have it installed? Once you >> get an mzML file you can copy it to your TPP data directory and run the >> search, validation, etc. Let us know how it goes. >> >> Cheers, >> -David >> >> On Wed, Sep 30, 2020 at 12:10 PM Laura Muehlbauer <[email protected]> >> wrote: >> >>> I'm using TPP for the first time, so I apologize if this has been >>> resolved elsewhere. I'm trying to convert some files from a Thermo Eclipse >>> to mzML and I get an unknown instrument error and the conversion fails. Is >>> there a way to bypass this? >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/2b97785c-9de6-4fd1-8bef-0f881c4e8f90n%40googlegroups.com >>> >>> <https://groups.google.com/d/msgid/spctools-discuss/2b97785c-9de6-4fd1-8bef-0f881c4e8f90n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/e21e41dc-50e9-4aa3-9314-dee3534fbf54n%40googlegroups.com.
