Thanks Eric for your reply. The database I am having is in a single file that is over 10 GB in size. It has been almost 24 hrs since I got the job run, and it is still running. Do you have a suggestion on the timeframe of jobs dealing with such huge files?
Thanks. Regards. On Thu, Oct 22, 2020 at 3:46 AM 'Eric Deutsch' via spctools-discuss < [email protected]> wrote: > Hi Aziz, there is no specific maximum size. In general, the larger your > database, the greater the memory requirements and CPU time needed for the > software tools and the lower your sensitivity, although it depends on the > degree of redundancy in your database. Hundreds of MB and hundreds of > thousands of protein sequences is routine. > > > > > > *From:* [email protected] < > [email protected]> *On Behalf Of *AZIZ ALNAKLI > *Sent:* Tuesday, October 20, 2020 9:15 PM > *To:* [email protected] > *Subject:* [spctools-discuss] maximum fasta file size > > > > Hi > > what is the maximum fasta file size that TPP can handle? > > Anyone knows? > > > > Thank you all. > > > > -- > > *Aziz Alnakli* > > Master of Research Candidate (Bioinformatics Research Group) > > *Faculty of Science and Engineering** | * Level 1 Room 120, F7B Building > (4 Wally's Walk) > Macquarie University, NSW 2109, Australia > > *M:* + 61 424375954* | **[email protected] > <[email protected]>* > > [image: Image removed by sender. Macquarie University] <http://mq.edu.au/> > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/CANqhZV4npzoZMuEkNiivFHpcdpENUgzdJLyHb0rANiUFeksceA%40mail.gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/CANqhZV4npzoZMuEkNiivFHpcdpENUgzdJLyHb0rANiUFeksceA%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > > -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/ff866da069b346e6b74a6c9f44a3d561%40mail.gmail.com > <https://groups.google.com/d/msgid/spctools-discuss/ff866da069b346e6b74a6c9f44a3d561%40mail.gmail.com?utm_medium=email&utm_source=footer> > . > -- *Aziz Alnakli* Master of Research Candidate (Bioinformatics Research Group) *Faculty of Science and Engineering** | * Level 1 Room 120, F7B Building (4 Wally's Walk) Macquarie University, NSW 2109, Australia *M:* + 61 424375954* | [email protected] <[email protected]>* <http://mq.edu.au/> [image: Macquarie University] <http://mq.edu.au/> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CANqhZV4DaJAuLp%3DVkWK%3DgHufegU_qPi1mZZhr05SN%2B6WsHc2pQ%40mail.gmail.com.
