Dear all, I noticed that not all the proteins that exist in my PeptideProphet file will appear in the ProteinProphet output. Obviously I expect some proteins to be determined as having very low probability by the ProteinProphet, but why they don't appear in the ProteinProphet altogether? How can I keep them in the output of the ProteinProphet?
Also, I am not setting anything to be excluded in the ProteinProphet setting (which I run through TPP). Many thanks for your help. Soroush -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/7f2700a6-ec5a-42b1-b6b1-835e4e48c799n%40googlegroups.com.
