It should only take a few minutes to run the code. Perhaps there is a permissions issue to execute that file on your computer. Normally the installer makes sure the permissions are setup correctly. Can you check the permissions for this file under properties -> security?
On Tue, Mar 9, 2021, 8:47 PM Panyue Chen <chenpanyue940...@gmail.com> wrote: > Hi David, > > Thanks for your fast reply and your help! > > I downloaded the code you provided and replaced the old updatepaths.pl > file in the bin folder. > While I updated the paths by updatedPaths utility in the Pentunia, the job > was not finished after around 40min. How long should I expect to get the > job done? Or could it because the web fails to connect? > > For your information I posted an image of what I selected on the > updatePaths utility page and an image of the job submitted. > > Best, > Panyue > [image: Updatepaths.png][image: JobRun.png] > > On Tuesday, March 9, 2021 at 4:34:01 PM UTC-5 David Shteynberg wrote: > >> Hello Panyue, >> >> I test the updatePaths.pl and found some problems with it correcting >> paths to directories on other drives on windows. I have committed a fix to >> this script which you can download here: >> https://sourceforge.net/p/sashimi/code/HEAD/tree/trunk/trans_proteomic_pipeline/perl/bin/updatepaths.pl >> >> Please replace your existing file in C:\TPP\bin (or where you installed >> the TPP) with the code at the link above. >> >> Cheers, >> -David >> >> On Tue, Mar 9, 2021 at 9:02 AM Panyue Chen <chenpany...@gmail.com> wrote: >> >>> Hi there, >>> >>> I was trying to follow the PTPprophet tutorial v0.4.0 to analyze a >>> subset of data from Ferries et al. (2017, JPR, 16, 3448). I have download >>> the tutorial data into the "tutorials" folder and checked all the files and >>> directories I should have. >>> But when I ran the PTM prophet, the job ends with an error as shown in >>> the picture. >>> >>> Please let me know if I missed any thing and how should I fix the error. >>> Thanks! >>> >>> -- >>> >>> Panyue Chen >>> Graduate student >>> Dr. Hazbun group >>> Purdue University >>> [image: error.png] >>> >>> -- >>> >> You received this message because you are subscribed to the Google Groups >>> "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to spctools-discu...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/5f678d66-9627-4064-9467-471d489eddd5n%40googlegroups.com >>> <https://groups.google.com/d/msgid/spctools-discuss/5f678d66-9627-4064-9467-471d489eddd5n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- > You received this message because you are subscribed to the Google Groups > "spctools-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to spctools-discuss+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/spctools-discuss/8e2e44ad-b9a3-41c2-badb-dbf955c5eb37n%40googlegroups.com > <https://groups.google.com/d/msgid/spctools-discuss/8e2e44ad-b9a3-41c2-badb-dbf955c5eb37n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to spctools-discuss+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/CAGJJY%3D_OSWqaqofX2dcyfybcya0P-10rh22OAmCRjT1gJxnxag%40mail.gmail.com.
