Dear Luis, Apologies for the delay. How can I send you the file/s? Thanks On Wednesday, November 2, 2022 at 10:15:37 PM UTC+2 [email protected] wrote:
> Hi Luis, > Sure. I don't have internet access all the time in the coming week but > will send you a download link when possible. > I should also mention that I should update that we upgrade to version TPP > v6.2.0 Nacreous-dev, Build 202209191518-8727 and things a somewhat better. > Thanks a lot. > > On Sunday, October 30, 2022 at 1:41:41 AM UTC+3 Luis wrote: > >> Hello, >> That is quite odd; Are you able to share a pepXML file so we can >> troubleshoot? You can contact me directly to arrange a file transfer. >> Thanks, >> --Luis >> >> >> On Tue, Oct 18, 2022 at 12:21 PM [email protected] <[email protected]> >> wrote: >> >>> Hi all, >>> >>> I am using the TPP v6.1.0 Parhelion, Build 202108271510 for analyzing >>> dimethylation following Comet (or MSFragger) search with the light label >>> set as fixed and the heavy mass difference as variable. Xpress settings >>> include mass tolerance of 20 ppmת a Minimum number of chromatogram points >>> needed for quantitation:3 and Number of isotopic peaks to sum is set to 0. >>> >>> When I open the interact.pep.xml file with the viewer and filter the >>> results based on probability, for some of the peptides there is a >>> discrepancy between the ratio shown in the pepXML and the one in the >>> XPressPeptideUpdateParser. The differences can be relatively large (for >>> example, 0.1 versus 1.5) >>> >>> Similar results are obtained if the Number of isotopic peaks to sum is >>> set to 1, 2 or 3. >>> >>> Can you please advise? >>> Many thanks, >>> OK >>> >>> -- >>> You received this message because you are subscribed to the Google >>> Groups "spctools-discuss" group. >>> To unsubscribe from this group and stop receiving emails from it, send >>> an email to [email protected]. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/spctools-discuss/8bd33f85-6997-4380-9cbf-d64dc518ad76n%40googlegroups.com >>> >>> <https://groups.google.com/d/msgid/spctools-discuss/8bd33f85-6997-4380-9cbf-d64dc518ad76n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/618a6c80-6287-4670-aefc-682130a6ed0an%40googlegroups.com.
