Hi all, Happy holidays! I have a new Eclipse in the lab and have been running my Comet + TPP pipeline successfully on a lot of data downloaded from PRIDE lately, but have run into an error with the new DDA data generated on the Eclipse. It seems to be failing at the protein prophet step and the error doesn't make much sense to me. Any idea what is going on?
I'm running TPP 6.1 and Comet 2022.01 rev. 1 although the error below is from the output of the Comet search through the TPP interface. I get a similar error on the command line at the same step. Here's the error message: WARNING: no data - output file will be empty command "C:/TPP/bin/ProteinProphet "interact.pep.xml" "interact.prot.xml"" failed: Operation not permitted command "C:/TPP/bin/ProteinProphet "interact.pep.xml" "interact.prot.xml"" exited with non-zero exit code: 1 QUIT - the job is incomplete -- You received this message because you are subscribed to the Google Groups "spctools-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/spctools-discuss/1a4f392c-7ec1-411b-8300-90c0f6b48158n%40googlegroups.com.
